Sanger Sequence Assembly Software Free Download Mac Os

  • A pipeline to revise a genome sequence of a prokaryotic sample via an iterative backbone remapping and local assembly method..

    • reviseq_0.1.1.tar.gz
    • Hongseok Tae
    • Freeware (Free)
    • 800 Kb
    • BSD; Linux
  • Sequencing technologies, such as Illumina sequencing, provide the sequences ofshort 'reads' of DNA that come from random positions on the genome. These readsthen must be assembled de-novo into the original genome, or, if there is ...

    • het-smooth
    • Michael Schatz, Eric Biggers
    • Freeware (Free)
    • Windows
  • GView is designed as a Java tool that can be used to display and navigate through bacterial genomes. GView is useful for producing high-quality genome maps for use in publications and websites, or as a visualization tool in a sequence annotation. ...

    • gview-1.1.1.zip
    • Aaron Petkau
    • Freeware (Free)
    • Windows All
  • 3D Genome Tuner draws circular genome map and enables viewing multi-genomes in 3D context. It also provides genome analysis and sequence alignment, making it a powerful tool in genome studies and. ...

    • tuner3d-2.1.1.jar
    • dgenometuner
    • Freeware (Free)
    • 4.09 Mb
    • Windows; Mac; Linux
  • GenomeComp is a tool for summarizing, GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of genome segments between species or strains.It can be easily used to compare, parsing and visualize large genomic sequences, especially closely related genomes such as inter-species or inter-strains.

    • GenomeComp1.3_Win.zip
    • Chinese National HumanGenome Center
    • Freeware (Free)
    • 1.21 Mb
    • Win All
  • JFinisher is software for alignment, editing and manipulation of biological sequences. It aims to assist in the finishing of genomeassembly. Starting from a reference sequence, the program align contigs using Smith-Waterman local alignment algoritm. ...

    • jFinisher.zip
    • sourceforge
    • Freeware (Free)
    • 1.3 Mb
    • Windows; Mac; Linux
  • ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequenceassembly and associated meta data. The tool was designed with the ABySS sequence assembler in mind and was motivated by the need. ...

    • launch.jnlp
    • BC Genome Sciences Centre
    • Freeware (Free)
    • Windows All
  • This is an approach that complements previous methods for reliable homozygous structural variation identification. Our approach accurately determines genotype and breakpoints relative to a reference genome based on de novo assembly of Illumina Genome ...

    • AsmSV.zip
    • ZhangFan
    • Freeware (Free)
    • 6.02 Mb
    • BSD; Mac; Linux
  • 3D Genome Tuner draws circular genome map and enables viewing multi-genomes in 3D context. It also provides genome analysis and sequence alignment, making it a powerful tool in genome studies and demonstrations..

    • tuner3d-2.1.1.jar
    • Qi Wang & Qun Liang
    • Freeware (Free)
    • 4.08 Mb
    • Win All
  • Lucy is a program for DNA sequence quality trimming and vector removal. Its purpose is to process DNA sequence data acquired from DNA sequencers to prepare the data for downstream processing applications such as genome assembly..

    • lucy1.20.tar.gz
    • thermodog
    • Freeware (Free)
    • 1.38 Mb
    • Linux
  • Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation. Artemis is written in. ...

    • Artemis
    • Wellcome Trust SangerInstitute
    • Freeware (Free)
    • 10 Mb
    • Windows2000, Windows2003, WinXP, Windows Vista, Windows 7, Linux, Mac OS X, Java
  • The HuRef Genome Browser is a Web resource for the navigation of an individual human genome, termed HuRef, published in PLoS Biology. The browser is a unified framework of annotation, assembly and synteny tools. It is online at. ...

    • HuRef Genome Browser
    • huref
    • Freeware (Free)
    • 8.92 Mb
    • N/A

Related:
  • The software source is free to download and use from the author's GitHub account. As well as pre-compiled executable binaries for Mac OS X and GNU Linux (64bit), can be found on the Github repository. Gap5 is a DNA sequence assembly visualiser and editing tool. It permits low level base by base editing as well as larger scale.
  • Assembly Software - Free Download Assembly - Top 4 Download - Top4Download.com offers free. software downloads for Windows, Mac, iOS and Android computers and mobile devices. Visit for free, full and secured software’s.

Sequence Scanner Software v1.0, is a free sequence viewer from Applied Biosystems that allows the user to see the raw data that we see in the facility. It only works on Windows. Finch Trace View, a newer viewer that is very nice, free, and works on Windows, Mac OS X, and Redhat/SuSE Linux Xplorer, from dnaTools, also works on Windows and Mac OS X.

Rice Genome Sequence - Complete Genome Sequence - Ensemble Genome Browser - Genome Research Rss - Human Genome Biology
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This is a list of computer software which is made for bioinformatics and released under open-source software licenses with articles in Wikipedia.

SoftwareDescriptionPlatformLicenseDeveloper
.NET BioLanguage-neutral toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists.NET FrameworkApacheCollaborative project
AMPHORAMetagenomics analysis softwareLinuxGPL?
AndurilComponent-based workflow framework for data analysisLinux, macOS, WindowsGPLUniversity of Helsinki
Ascalaph DesignerComputer program for general purpose molecular modelling for molecular design and simulations.?GPLv2Agile Molecule
AutoDockSuite of automated docking tools?GPL?
AvogadroMolecule editor and visualizer for in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.?GPL?
BioclipseVisual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP)?Eclipse PublicThe Bioclipse Project
BioconductorR (programming language) language toolkitLinux, macOS, WindowsArtistic 2.0Fred Hutchinson Cancer Research Center
BioJavaJavaLinux, macOS, WindowsLGPL v2.1Open Bioinformatics Foundation
BioJSJavaScriptWeb browserApache?
BioMOBYRegistry of web servicesWeb browserArtisticOpen Bioinformatics Foundation
BioPerlPerl language toolkitCross-platformArtistic, GPLOpen Bioinformatics Foundation
BioPHPPHP language toolkit?GPL v2Open Bioinformatics Foundation
BiopythonPython language toolkitCross-platformBiopython[1]Open Bioinformatics Foundation
BioRubyRuby language toolkit?GPL v2 or RubyOpen Bioinformatics Foundation
CP2KPerform atomistic simulations of solid state, liquid, molecular and biological systems.?GPL and LGPLFree open source GNU GPLv2 or later
EMBOSSSuite of packages for sequencing, searching, etc.?GPL and LGPLCollaborative project
GalaxyScientific workflow and data integration systemUnix-likeAcademic FreeCollaborative project
GenePatternScientific workflow system that provides access to hundreds of genomic analysis toolsUnix-like (public server); Linux, macOS, WindowsMITBroad Institute, UC San Diego
GeworkbenchGenomic data integration platformLinux, macOS, WindowsGeWorkbench License[2]Columbia University
GMODToolkit to address many common challenges at biological databasesUnix-like (server), Web browser (client)Varies depending on toolCollaborative project
GenGISApplication that allows combining digital map data with information about biological sequences collected from the environmentWindows, macOSGPLCollaborative project
GenomespaceCentralized web application that provides data format transformations and facilitates connections with other bioinformatics toolsWeb browserLGPLBroad Institute, collaborative project
GENtleAn equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files?GPLMagnus Manske
GROMACSMolecular dynamics package mainly designed for simulations of proteins, lipids and nucleic acids.Linux, macOS, WindowsCommon Public 1.0GenoViz
Integrated Genome BrowserJava-based desktop genome browserLinux, macOS, WindowsCommon Public 1.0GenoViz
InterMineExtensive data warehouse system for the analysis and integration of biological datasetsCross-platformLGPLUniversity of Cambridge
LabKey ServerSoftware platform, allows organizations to integrate, analyze, and share complex biomedical dataLinux, macOS, WindowsApacheLabKey Software Foundation
LAMMPSMolecular dynamics programLinux, macOS, WindowsApacheSandia National Laboratories.
mothurSoftware for analysis of the 16S rRNA geneLinux, macOS, Windows?University of Michigan
PathVisioDesktop software for drawing, analysing, and visualizing biological pathwaysLinux, macOS, WindowsApache 2.0Maastricht University
OrangeComponent-based data mining and machine learning software suite, featuring a visual programming front-end for exploratory data analysis and interactive visualization, and Python bindings and libraries for scriptingLinux, macOS, WindowsGPLUniversity of Ljubljana
Staden PackageSequence assembly, editing, and analysis, mainly consisting of gap4, gap5, and spin.Linux, macOS, WindowsBSDWellcome Trust Sanger Institute, Medical Research Council
Taverna workbenchTool to design and execute workflowsLinux, macOS, WindowsLGPLmyGrid
UGENEIntegrated bioinformatics toolsLinux, macOS, WindowsGPL 2Unipro
UnipeptMetaproteomics biodiversity analysisWeb browserMITGhent University
VOTCAA Coarse-grained modeling package,GNU/Linux, macOS, Windows, any other Unix varietyApache License 2.0Max Planck Institute for Polymer Research

See also[edit]

References[edit]

  1. ^Biopython License
  2. ^'GeWorkbench License'. geWorkbench. Columbia University. 15 June 2014.

External links[edit]

Sanger Sequence Assembly software, free download Mac Os Download

  • Free Biology Software – Free Software Directory – Free Software Foundation
Mac

Sanger Sequence Assembly software, free download Mac Os X

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